Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_4069SAM-dependent methyltransferase type 11. (261 aa)    
Predicted Functional Partners:
SO_0735
Predicted inner membrane protein.
  
    0.640
SO_1699
Transmembrane transcriptional regulator.
  
    0.635
accADCB
acetyl-CoA carboxylase multifunctional enzyme AccADCB.
 
  
 0.480
SO_3800
Surface-associated serine protease; Belongs to the peptidase S8 family.
  
    0.452
SO_0306
Outer membrane protein COG4775 family.
  
    0.451
yggE
Periplasmic protein associated with oxidative stress YggE.
  
    0.418
SO_4333
Uncharacterized protein.
   
    0.413
SO_0734
Transcriptional repressor PadR family.
  
     0.410
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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