STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4080Outer membrane lipoprotein intimin-like protein. (826 aa)    
Predicted Functional Partners:
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
  
 
 0.758
sapSH
Extracellular serine alkaline protease SapSH.
  
 
 0.699
SO_4079
Protein of unknown function DUF615; Belongs to the UPF0307 family.
       0.682
SO_1557
Outer membrane phosphoporin.
  
     0.578
ftsK
Double-stranded DNA translocase FtsK; Essential cell division protein that coordinates cell division and chromosome segregation. The N-terminus is involved in assembly of the cell-division machinery. The C-terminus functions as a DNA motor that moves dsDNA in an ATP-dependent manner towards the dif recombination site, which is located within the replication terminus region. Translocation stops specifically at Xer-dif sites, where FtsK interacts with the Xer recombinase, allowing activation of chromosome unlinking by recombination. FtsK orienting polar sequences (KOPS) guide the directi [...]
   
 
 0.574
SO_0440
ImpA-like cell surface immunomodulating metalloprotease.
  
    0.550
SO_2192
Two component signal transduction system controlling sortase system histidine kinase.
  
 
   0.486
SO_3514
TonB-dependent chitooligosaccharide receptor.
  
 
   0.485
pepO-2
Thermoregulated outer membrane M13 family zinc endopeptidase PepO.
  
    0.481
omp35
Outer membrane porin Omp35.
  
    0.461
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.