STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiAChitinase ChiA. (729 aa)    
Predicted Functional Partners:
SO_4194
Glycosyl transferase TIGR00661.
   
  
 0.894
gbpA
N-acetylglucosamine-binding protein A GbpA; Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin. Belongs to the GbpA family.
  
0.799
rimK
Ribosomal protein S6 glutaminyl transferase RimK.
      
 0.782
rimK-4
Ribosomal protein S6 glutaminyl transferase RimK; Belongs to the RimK family.
      
 0.782
rimK-3
Ribosomal protein S6 glutaminyl transferase RimK.
   
  
 0.782
SO_0076
Outer membrane morn variant repeat-containing protein.
  
     0.742
hexB
beta-N-acetylhexosaminidase HexB.
 
   
 0.602
ompK
Nucleoside-specific outer membrane porin OmpK.
      
 0.571
ptsG
Phosphotransferase system (PTS) glucose-specific IIBC component PtsG.
  
  
 0.541
pnuR
Transcriptional activator of nicotinamideribose utilization PnuR.
  
    0.541
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.