STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiAChitinase ChiA. (729 aa)    
Predicted Functional Partners:
gbpA
N-acetylglucosamine-binding protein A GbpA; Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin. Belongs to the GbpA family.
 
  
0.900
SO_4194
Glycosyl transferase TIGR00661.
   
  
 0.896
SO_0076
Outer membrane morn variant repeat-containing protein.
  
     0.742
hexB
beta-N-acetylhexosaminidase HexB.
 
   
 0.709
rimK
Ribosomal protein S6 glutaminyl transferase RimK.
      
 0.699
rimK-4
Ribosomal protein S6 glutaminyl transferase RimK; Belongs to the RimK family.
      
 0.699
rimK-3
Ribosomal protein S6 glutaminyl transferase RimK.
      
 0.699
ptsG
Phosphotransferase system (PTS) glucose-specific IIBC component PtsG.
  
  
 0.642
prtV
Extracellular metalloprotease PrtV.
  
  
 0.623
dinB
DNA polymerase IV DinB; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
    
   0.582
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.