STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4087ABC-type efflux system permease component 2. (378 aa)    
Predicted Functional Partners:
SO_4088
ABC-type efflux system permease component 1.
   
0.965
SO_4089
ABC-type efflux system MFP component.
  
 0.955
SO_4090
ABC-type efflux system secretin component.
 
  
 0.948
SO_1706
ABC-type drugE1 family efflux system ATPase component.
 
  
 0.839
SO_1705
ABC-type drugE1 family efflux system MFP component.
 
  
 0.797
ycaO
Protein involved in RimO-mediated beta-methylthiolation of ribosomal protein S12 YcaO.
  
  
 0.571
ydjA
Nitroreductase YdjA.
  
  
 0.550
nfnB
Bifunctional oxygen-insensitive NAD(P)H nitroreductase/dihydropteridine reductase NfnB.
  
  
 0.547
tldD
Microcin-processing peptidase 2 TldD.
  
    0.493
SO_2143
Aspartate-alanine antiporter.
  
     0.465
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.