Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_4087ABC-type efflux system permease component 2. (378 aa)    
Predicted Functional Partners:
SO_4088
ABC-type efflux system permease component 1.
   
0.965
SO_4089
ABC-type efflux system MFP component.
  
 0.959
SO_4090
ABC-type efflux system secretin component.
 
  
 0.949
SO_1706
ABC-type drugE1 family efflux system ATPase component.
 
  
 0.848
SO_1705
ABC-type drugE1 family efflux system MFP component.
 
  
 0.817
ycaO
Protein involved in RimO-mediated beta-methylthiolation of ribosomal protein S12 YcaO.
  
  
 0.589
ydjA
Nitroreductase YdjA.
  
  
 0.560
nfnB
Bifunctional oxygen-insensitive NAD(P)H nitroreductase/dihydropteridine reductase NfnB.
  
  
 0.560
tldD
Microcin-processing peptidase 2 TldD.
       0.491
SO_2143
Aspartate-alanine antiporter.
  
     0.465
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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