Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SO_4090ABC-type efflux system secretin component. (473 aa)    
Predicted Functional Partners:
SO_4089
ABC-type efflux system MFP component.
 
 0.980
SO_4087
ABC-type efflux system permease component 2.
 
  
 0.949
SO_3278
RND superfamily efflux pump MFP component; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.947
SO_4088
ABC-type efflux system permease component 1.
 
  
 0.945
vexB
RND-type multidrug/detergent efflux system MFP component VexB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.945
SO_4015
HAE1 family effllux pump MFP component; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.931
macA
ABC-type macrolide export systemMFP component MacA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.930
SO_0946
RND superfamily efflux pump MFP component; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.930
SO_1881
HAE1 family efflux pump MFP component; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.930
SO_1925
RND superfamily efflux pump MFP component; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.930
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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