STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tldDMicrocin-processing peptidase 2 TldD. (482 aa)    
Predicted Functional Partners:
tldE
Microcin-processing peptidase TldE.
 
 
 0.971
coaE
dephospho-CoA kinase CoaE; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
      0.734
SO_4093
TIGR02099 family protein.
 
   
 0.661
SO_4092
Hydrolase carbon-nitrogen family.
  
    0.566
rng
Ribonuclease G Rng.
       0.548
SO_4089
ABC-type efflux system MFP component.
  
    0.495
SO_4090
ABC-type efflux system secretin component.
  
    0.495
SO_4088
ABC-type efflux system permease component 1.
  
    0.494
SO_4087
ABC-type efflux system permease component 2.
  
    0.493
mreB
Cell wall structural complex component MreB.
 
    0.446
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.