STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mshPMSHA secretion apparatus component MshP. (151 aa)    
Predicted Functional Partners:
mshC
MSHA minor pilin protein MshC.
  
    0.846
mshD
MshA minor pilin protein MshD.
  
    0.842
mshQ
MshA pili-associated adhesin MshQ.
  
    0.839
mshO
MshA minor pilin protein MshO.
  
    0.806
pilY
Type IV pili system adhesin PilY.
  
  
 0.762
SO_0852
PilD processed protein.
  
  
 0.654
pilV
Type IV pilin modification protein PilV.
  
  
 0.654
SO_0851
PilD processed protein.
  
  
 0.653
pilW
Type IV minor pilin protein PilW.
  
  
 0.653
SO_0854
PilD processed protein.
  
  
 0.638
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.