Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mshOMshA minor pilin protein MshO. (282 aa)    
Predicted Functional Partners:
mshD
MshA minor pilin protein MshD.
 
    0.954
mshQ
MshA pili-associated adhesin MshQ.
 
    0.950
mshA
MSHA major pilin subunit MshA.
 
   
 0.890
mshJ
MSHA biogenesis protein MshJ.
 
   
 0.861
mshB
MSHA minor pilin protein MshB.
 
   
 0.853
mshL
MSHA system outer membrane secretin MshL.
 
   
 0.846
mshI2
MSHA biogenesis protein MshI2.
 
  
 0.845
mshI1
MSHA biogenesis protein MshI1.
 
  
 0.840
mshN
MSHA biogenesis protein MshN.
 
     0.834
mshP
MSHA secretion apparatus component MshP.
  
    0.806
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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