Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
mshCMSHA minor pilin protein MshC. (157 aa)    
Predicted Functional Partners:
mshD
MshA minor pilin protein MshD.
 
    0.909
mshP
MSHA secretion apparatus component MshP.
  
    0.846
mshO
MshA minor pilin protein MshO.
  
    0.806
mshQ
MshA pili-associated adhesin MshQ.
  
    0.800
yciA
acyl-CoA thioesterase YciA.
      
 0.699
fabB
3-oxoacyl-(acyl-carrier-protein) synthase I FabB; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
      
 0.668
mshG
MSHA biogenesis protein MshG.
  
  
 0.582
mshE
MSHA pilus assembly ATPase MshE.
  
 
 0.577
tesA
Multifunctional thioesterase/protease/lysophospholipase L1 TesA.
      
 0.519
mshA
MSHA major pilin subunit MshA.
       0.512
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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