Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mshEMSHA pilus assembly ATPase MshE. (586 aa)    
Predicted Functional Partners:
mshG
MSHA biogenesis protein MshG.
 
 
 0.998
mshL
MSHA system outer membrane secretin MshL.
 
  
 0.985
mshA
MSHA major pilin subunit MshA.
 
 
 0.958
gspF
T2aSS secretion system inner membrane platform protein GspF.
 
 
 0.933
pilC
Type IV pilus inner membrane protein PilC.
 
 
 0.932
mshH
Signalling protein with GGDEF and EAL domains MshH.
  
  
 0.885
pilD
Type IV prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.881
mshI1
MSHA biogenesis protein MshI1.
 
 
 
 0.875
mshI2
MSHA biogenesis protein MshI2.
 
 
 0.875
mshQ
MshA pili-associated adhesin MshQ.
 
   
 0.868
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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