Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mshLMSHA system outer membrane secretin MshL. (560 aa)    
Predicted Functional Partners:
mshG
MSHA biogenesis protein MshG.
 
  
 0.993
mshJ
MSHA biogenesis protein MshJ.
 
  
 0.991
mshQ
MshA pili-associated adhesin MshQ.
 
  
 0.989
mshE
MSHA pilus assembly ATPase MshE.
 
  
 0.985
mshA
MSHA major pilin subunit MshA.
 
   
 0.962
mshI2
MSHA biogenesis protein MshI2.
 
   
 0.960
mshI1
MSHA biogenesis protein MshI1.
 
  
 0.958
mshN
MSHA biogenesis protein MshN.
 
     0.954
mshM
MSHA biogenesis protein MshM.
 
  
 0.954
mshB
MSHA minor pilin protein MshB.
 
   
 0.916
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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