STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mshJMSHA biogenesis protein MshJ. (216 aa)    
Predicted Functional Partners:
mshL
MSHA system outer membrane secretin MshL.
 
  
 0.991
mshQ
MshA pili-associated adhesin MshQ.
 
   
 0.965
mshI1
MSHA biogenesis protein MshI1.
 
     0.960
mshI2
MSHA biogenesis protein MshI2.
 
     0.960
mshN
MSHA biogenesis protein MshN.
 
     0.950
mshM
MSHA biogenesis protein MshM.
 
    0.938
mshB
MSHA minor pilin protein MshB.
 
   
 0.916
mshA
MSHA major pilin subunit MshA.
 
   
 0.915
mshG
MSHA biogenesis protein MshG.
 
  
 0.907
SO_0456
Alpha-ketoglutarate uptake system substrate-binding component.
      
 0.881
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.