Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_4130Putative membrane protein Nfed superfamily. (154 aa)    
Predicted Functional Partners:
SO_4128
Putative negative regulator of univalent cation permeability.
 
 
 0.999
SO_4129
Putative negative regulator of univalent cation permeability.
 
 
 0.999
SO_1377
Putative negative regulator of univalent cation permeability.
  
  
 0.873
cobS
Cobalamin 5-phosphate synthase CobS; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
    0.844
SO_1376
Integral membrane protein of unknown function DUF1449.
  
  
 0.635
SO_1977
Inner membrane of unknown function DUF307.
   
    0.516
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
   
    0.500
hflC
Membrane anchored FtsH modulator component 2 HflC; HflC and HflK could regulate a protease.
 
 
 0.482
hflK
Membrane anchored FtsH modulator component 1 HflK; HflC and HflK could encode or regulate a protease.
 
 
 0.480
SO_0445
Putative negative regulator of univalent cation permeability.
 
 
 0.469
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.