STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4147Type I secretion system ATPase and inner membrane subunit HlyB family. (694 aa)    
Predicted Functional Partners:
SO_4148
Type I protein secretion system MFP component HlyD family.
 
 0.985
SO_4149
Secreted VCBS domain protein.
 
  
 0.920
aggB
Type I protein secretion system MFP component AggB.
 
 0.902
SO_4146
Type I secretion system ATPase subunit HlyB family.
 
   
0.842
SO_0055
Tetratricopeptide repeat-containing protein.
 
     0.655
bpfA
Biofilm-promoting protein BpfA.
 
  
 0.638
torF
TMAO reductase system outer membrane porin TorF.
  
     0.627
aggA
Type I protein secretion system secretin component AggA.
 
  
 0.621
SO_1482
TonB-dependent receptor.
  
    0.617
msbA
ABC-type lipid A export system bifunctional ATPase and permease components MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 
 
0.595
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.