STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_4148Type I protein secretion system MFP component HlyD family. (441 aa)    
Predicted Functional Partners:
SO_4147
Type I secretion system ATPase and inner membrane subunit HlyB family.
 
 0.991
SO_4146
Type I secretion system ATPase subunit HlyB family.
 
 
 0.988
aggC
Type I protein secretion system bifunctional ATPase and permease component AggC.
 
 0.953
SO_4149
Secreted VCBS domain protein.
 
  
 0.940
aggA
Type I protein secretion system secretin component AggA.
 
 
 0.874
bpfA
Biofilm-promoting protein BpfA.
 
  
 0.710
SO_3480
Cold-active protein-tyrosine phosphatase.
   
    0.694
macB
ABC-type macrolide export system bifunctional ATPase and permease component MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
  
 0.654
SO_4322
T1SS associated periplasmic transglutaminase-like cysteine proteinase.
 
   
 0.649
tolC
Global secretion system secretin TolC.
  
 
 0.620
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.