Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
SO_4149Secreted VCBS domain protein. (5020 aa)    
Predicted Functional Partners:
SO_4148
Type I protein secretion system MFP component HlyD family.
 
  
 0.940
SO_4146
Type I secretion system ATPase subunit HlyB family.
 
  
 0.920
SO_4147
Type I secretion system ATPase and inner membrane subunit HlyB family.
 
  
 0.914
aggA
Type I protein secretion system secretin component AggA.
 
  
 0.826
SO_4322
T1SS associated periplasmic transglutaminase-like cysteine proteinase.
  
   
 0.764
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
  
 
 0.743
sapSH
Extracellular serine alkaline protease SapSH.
  
 
 0.708
aggB
Type I protein secretion system MFP component AggB.
 
   
 0.705
SO_4323
Bifunctional diguanylate cyclase/phosphodiesterase LasD-like protein.
  
   
 0.705
aggC
Type I protein secretion system bifunctional ATPase and permease component AggC.
 
  
 0.683
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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