STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_4150Sulphate transporter. (390 aa)    
Predicted Functional Partners:
SO_4712
ABC-type transporter ATPase component.
      
 0.793
SO_2045
Cation efflux protein CDF family.
   
 
 0.705
putA
TonB-dependent ferric putrebactin siderophore receptor PutA.
      
 0.669
SO_3063
Cation:alanine/glycine transporter AGCS family.
      
 0.669
grtP
D-glycerate transporter GrtP.
      
 0.668
SO_1580
TonB-dependent haem/haemoglobin receptor.
      
 0.667
SO_4743
TonB-dependent siderophore receptor.
      
 0.661
petB
Ubiquinol-cytochrome c reductase cytochrome b subunit PetB; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
   0.600
SO_0915
Ankyrin domain protein.
  
 
 
 0.578
pubB
N-hydroxyputrescine-succinyl CoA transferase PubB.
      
 0.511
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.