STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_4151Polysaccharide deacetylase. (334 aa)    
Predicted Functional Partners:
SO_3381
Amine oxidase.
      
 0.869
SO_4152
SnoaL family protein.
 
    0.837
sye3
NAD(P)H:flavin oxidoreductase Sye3.
  
    0.776
fadI
Anaerobic fatty oxidation complex beta subunit FadI; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
      
 0.662
SO_4154
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
   0.561
chiA
Chitinase ChiA.
     
 0.487
SO_3808
Protein of unknown function DUF2804.
   
  
 0.431
SO_4690
Glycosyl transferase family 83.
  
  
 0.424
SO_0679
Mu phage uncharacterized protein.
   
    0.413
SO_1957
Predicted periplasmic protein.
  
    0.401
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.