close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4169Deoxyribodipyrimidine photolyase-related protein. (521 aa)    
Predicted Functional Partners:
SO_4170
Cell-cell signaling protein C-factor.
 
  
 0.964
phrB
Deoxyribodipyrimidine photolyase PhrB; Belongs to the DNA photolyase family.
 
   
 0.856
cfaS
Cyclopropane-fatty-acyl-phospholipid synthase CfaS.
 
   
 0.821
slyA
Transcriptional regulator SlyA.
   
    0.793
SO_1986
RNA polymerase sigma factor ECF family 11; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.791
SO_3386
Bifunctional protein of unknown functions DUF523 and DUF1722.
  
  
 0.765
SO_1987
ATP-dependent protease La (LON) domain protein.
   
  
 0.761
SO_3374
Membrane protein of unknown function DUF3634.
      
 0.757
chrR
anti-ECFsigma factor ChrR.
 
   
 0.743
yfcH
Predicted nucleoside-diphosphate sugar epimerase YfcH.
      0.691
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.