Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_4170Cell-cell signaling protein C-factor. (236 aa)    
Predicted Functional Partners:
SO_4169
Deoxyribodipyrimidine photolyase-related protein.
 
  
 0.970
SO_1987
ATP-dependent protease La (LON) domain protein.
  
  
 0.839
SO_1986
RNA polymerase sigma factor ECF family 11; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.827
SO_3374
Membrane protein of unknown function DUF3634.
      
 0.806
SO_3386
Bifunctional protein of unknown functions DUF523 and DUF1722.
   
  
 0.806
nuoCD
NADH-ubiquinone oxidoreductase subunit CD NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 
 0.790
cfaS
Cyclopropane-fatty-acyl-phospholipid synthase CfaS.
  
  
 0.786
accADCB
acetyl-CoA carboxylase multifunctional enzyme AccADCB.
  
  
 0.727
chrR
anti-ECFsigma factor ChrR.
  
   
 0.720
SO_1563
Cytoplasmic glutathione peroxidase.
   
 
 0.689
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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