STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_4176Metallophosphatase binding domain protein. (615 aa)    
Predicted Functional Partners:
prrB
Two-component system, sensor histidine kinase RegB; Oxygen-responsive two component signal transduction system controlling redox affected systems histidine kinase PrrB.
  
    0.531
SO_3378
Membrane protein of unknown function DUF2878.
  
    0.524
prrA
Two-component system, response regulator RegA; Oxygen-responsive two component signal transduction system controlling redox affected systems response regulator PrrA.
  
    0.516
SO_4174
dTDP-4-dehydrorhamnose reductase family; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
       0.506
SO_4171
Uncharacterized protein.
  
    0.466
phoA
Periplasmic alkaline phosphatase PhoA; Belongs to the alkaline phosphatase family.
  
  
 0.447
SO_2597
Outer membrane protein of unknown function DUF1302.
  
     0.442
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.