STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4182ATP-dependent protease La (LON) domain protein. (191 aa)    
Predicted Functional Partners:
SO_1375
Thermostable carboxypeptidase 1; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.
      
 0.796
gspN
T2aSS secretion system protein GspN.
  
     0.759
SO_2872
Membrane protein of unknown function DUF2069.
  
     0.711
tnpA-119
ISSod1 transposase TnpA_ISSod1.
       0.682
SO_2254
Periplasmic protein of unknown function DUF2803.
  
     0.658
galK
Galactokinase GalK; Belongs to the GHMP kinase family. GalK subfamily.
      
 0.651
gspL
T2aSSsecretion system inner membrane platform protein GspL; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.622
SO_4181
RNA pseudouridylate synthase family protein.
       0.613
SO_0404
Zinc dependent metalloprotease domain lipoprotein.
  
     0.595
SO_2557
TIGR03503 family protein.
  
    0.575
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.