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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4193Esterase/lipase/thioesterase family protein. (457 aa)    
Predicted Functional Partners:
SO_1999
Phospholipase/carboxylesterase family protein.
     
 0.837
wbfY
Polysaccharide biosynthesis protein epimerase/dehydratase-like WbfY.
      
 0.731
SO_4682
Glycosyl transferase family 4.
  
 
 0.714
SO_3174
O-antigen biosynthesis glycosyl transferase family 4.
   
 
 0.712
SO_3176
O-antigen biosynthesis glycosyl transferase family 4.
   
 
 0.712
wabH
Glycosyl transferase family 4 WabH.
   
 
 0.712
SO_4681
Glycosyl transferase family 4.
   
 
 0.712
pflA
Pyruvate formate-lyase 1 activating enzyme PflA; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.
   
  
 0.652
aceB
Malate synthase A AceB.
      
 0.566
barA
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA.
  
  
 0.516
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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