STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_4194Glycosyl transferase TIGR00661. (346 aa)    
Predicted Functional Partners:
SO_4195
PAP2 family protein.
 
    0.914
chiA
Chitinase ChiA.
   
  
 0.896
pfaA
Omega-3 polyunsaturated fatty acid synthase subunit PfaA.
  
  
 0.540
gpJ
Mu phage baseplate assembly protein GpJ.
   
    0.511
SO_4193
Esterase/lipase/thioesterase family protein.
  
    0.501
SO_1238
Lysophospholipid acyltransferase.
  
    0.490
rsd
Regulator of sigma D Rsd; Belongs to the Rsd/AlgQ family.
  
     0.467
ftsN
Cell division protein FtsN.
 
     0.451
SO_4403
Lipopotein of unknown function DUF2959.
  
     0.438
rraA
Ribonuclease E inhibitor RraA; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. Modulates RNA-binding and helicase activities of the degradosome.
       0.420
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.