STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_42077TM intracellular signalling protein with GGDEF domain. (625 aa)    
Predicted Functional Partners:
SO_0860
Two component signal transduction system response regulator with HD domain.
 
    0.868
tatD
Deoxyribonuclease TatD.
  
    0.797
SO_2498
Bifunctional diguanylate cyclase/phosphodiesterase with GAF and PAS sensory domains.
 
  
 0.774
SO_4205
Putative periplasmic protein in twin arginine protein translocase system locus.
       0.773
hemB-2
Delta-aminolevulinic acid dehydratase HemB; Belongs to the ALAD family.
  
    0.773
SO_4145
Signalling protein with EAL and C2 domains.
  
    0.766
SO_2539
Two component signal transduction system response regulator with cyclic diguanylate phosphodiesterase activity and PAS sensory domain.
 
  
 0.753
SO_4003
Metal dependent phosphohydrolase with response regulator receiver modulation.
 
    0.748
SO_4734
Bifunctional diguanylate cyclase/phosphodiesterase with PAS sensory domain.
 
 
 0.735
SO_3821
Diguanylate phosphodiesterase.
  
    0.729
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.