STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4252Subfamily S9C unassigned peptidase. (662 aa)    
Predicted Functional Partners:
SO_0445
Putative negative regulator of univalent cation permeability.
  
    0.731
SO_2047
Prolyl oligopeptidase family S9 protein.
  
  
 0.695
SO_1539
Periplasmic peptidase family S9.
  
    0.671
SO_1822
TonB-dependent receptor.
 
    0.563
SO_0185
Microcystin dependent MdpB family protein.
   
    0.511
SO_2570
DUF885 family lipoprotein.
  
    0.511
malT
Putative maltose transporter MalT.
  
     0.506
slmA
Transcriptional repressor of cell division SlmA; Required for nucleoid occlusion (NO) phenomenon, which prevents Z-ring formation and cell division over the nucleoid. Acts as a DNA-associated cell division inhibitor that binds simultaneously chromosomal DNA and FtsZ, and disrupts the assembly of FtsZ polymers. SlmA-DNA-binding sequences (SBS) are dispersed on non-Ter regions of the chromosome, preventing FtsZ polymerization at these regions.
       0.488
SO_1188
Inner membrane protein with PepSY TM helix.
  
     0.487
SO_3514
TonB-dependent chitooligosaccharide receptor.
  
     0.483
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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