Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ktrA-2Sodium-dependent potassium uptake system NAD binding component KtrA. (214 aa)    
Predicted Functional Partners:
ktrB-2
Sodium-dependent potassium uptake system permease component KtrB.
 
 
 0.994
ktrB
Sodium-dependent potassium uptake protein integral membrane component KtrB.
 
 
 0.978
SO_4068
Uncharacterized protein.
   
    0.694
SO_4283
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
       0.686
btuC
ABC-type cobalamin uptake system permease component BtuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
      
 0.664
rsmB
16S rRNA (cytosine967-C5)-methyltransferase RsmB; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.571
moaE
Molybdenum cofactor biosynthesis protein E MoaE.
   
    0.547
hemD
uroporphyrinogen-III synthase HemD; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
    0.513
kefB
Glutathione-gated K(+)-efflux system KefB; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
  
 0.506
btuD
ABC-type cobalamin uptake system ATPase component BtuD.
      
 0.476
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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