STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ktrB-2Sodium-dependent potassium uptake system permease component KtrB. (454 aa)    
Predicted Functional Partners:
ktrA-2
Sodium-dependent potassium uptake system NAD binding component KtrA.
 
 0.989
ktrA
Sodium-dependent potassium uptake system NAD binding component KtrA.
 
 0.938
SO_4283
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
  
    0.728
SO_0695
Potassium efflux protein CPA2 family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 
 0.633
btuC
ABC-type cobalamin uptake system permease component BtuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
   
  
 0.613
kvaP
Voltage-gated potassium uptake system KvaP.
 
 
 0.575
rmrB
Multidrug efflux pump permease component RmrB; Belongs to the major facilitator superfamily.
   
  
 0.528
trkA
Potassium uptake protein TrkA.
  
 
 0.514
SO_3692
ABC-type macrolide family export system ATPase component.
   
  
 0.504
SO_2523
TonB-dependent phytase receptor.
   
  
 0.492
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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