STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnrNRepair of iron centers (RIC) protein DnrN; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family. (248 aa)    
Predicted Functional Partners:
hcr
NADH oxidoreductase Hcr.
 
  
 0.927
nnrS
Heme-copper-containing inner membrane protein NnrS.
 
  
 0.908
ygbA
Nitrosative stress induced protein YgbA.
  
  
 0.881
nsrR
Nitrite-sensitive transcriptional repressor NsrR.
  
  
 0.799
hcp
Hydroxylamine reductase Hcp; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.776
phsA
Sulfur reductase molybdoperterin-binding subunit PhsA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
      
 0.665
nosD
ABC-type copper transport system substrate-binding component NosD.
 
     0.632
phyS
Beta-propeller phytase PhyS.
   
    0.602
iscR
Transcriptional repressor of iron-sulfur cluster assembly genes IscR; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins.
  
  
 0.592
narQ
Nitrate/nitrite-responsive two component signal transduction system histidine kinase NarQ.
  
   
 0.583
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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