STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aggBType I protein secretion system MFP component AggB. (460 aa)    
Predicted Functional Partners:
aggC
Type I protein secretion system bifunctional ATPase and permease component AggC.
 
 0.999
aggA
Type I protein secretion system secretin component AggA.
 
 
 0.994
SO_4323
Bifunctional diguanylate cyclase/phosphodiesterase LasD-like protein.
 
  
 0.975
SO_4322
T1SS associated periplasmic transglutaminase-like cysteine proteinase.
 
  
 0.962
bpfA
Biofilm-promoting protein BpfA.
 
  
 0.957
SO_4146
Type I secretion system ATPase subunit HlyB family.
 
 0.918
SO_4147
Type I secretion system ATPase and inner membrane subunit HlyB family.
 
 0.902
SO_4321
Pal-like T1SS-linked outer membrane lipoprotein.
  
  
 0.865
tolC
Global secretion system secretin TolC.
  
 
 0.793
macB
ABC-type macrolide export system bifunctional ATPase and permease component MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.754
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.