Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aggBType I protein secretion system MFP component AggB. (460 aa)    
Predicted Functional Partners:
aggC
Type I protein secretion system bifunctional ATPase and permease component AggC.
 
 0.998
aggA
Type I protein secretion system secretin component AggA.
 
 
 0.994
SO_4323
Bifunctional diguanylate cyclase/phosphodiesterase LasD-like protein.
 
  
 0.971
bpfA
Biofilm-promoting protein BpfA.
 
  
 0.959
SO_4322
T1SS associated periplasmic transglutaminase-like cysteine proteinase.
 
  
 0.959
SO_4146
Type I secretion system ATPase subunit HlyB family.
 
 0.951
SO_4147
Type I secretion system ATPase and inner membrane subunit HlyB family.
 
 0.941
SO_4321
Pal-like T1SS-linked outer membrane lipoprotein.
  
  
 0.844
tolC
Global secretion system secretin TolC.
  
 
 0.762
SO_4149
Secreted VCBS domain protein.
 
   
 0.705
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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