Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_4324Bifunctional diguanylate cyclase/phosphodiesterase with GAF sensory domain. (876 aa)    
Predicted Functional Partners:
SO_4734
Bifunctional diguanylate cyclase/phosphodiesterase with PAS sensory domain.
 
 
0.944
SO_0859
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
  
 
 0.931
SO_4657
Diguanylate cyclase/phosphodiesterase with PAS and LOV sensory domains and Chase small molecule binding site.
 
 
0.915
mshH
Signalling protein with GGDEF and EAL domains MshH.
 
 
 0.907
SO_1055
Diguanylate cyclase with PAS and GAF sensory domains.
 
 
0.905
SO_2507
Bifunctional diguanylate cyclase/phosphodiesterase.
 
 
 0.903
SO_3404
Methyl accepting sensory transducer with PAS sensory domain.
 
 
 
 0.900
SO_1385
Chemotaxis signal transduction system methyl accepting sensory transducer with PAS sensory domain.
 
 
 
 0.899
SO_0555
Bifunctional diguanylate cyclase/phosphodiesterase.
 
 
 0.888
SO_0584
Chemotaxis signal transduction system methyl accepting sensory transducer with PAS sensory domain.
   
 
 0.883
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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