Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SO_4361Extracellular oxidoreductase associated protein. (155 aa)    
Predicted Functional Partners:
SO_4362
Extracellular oxidoreductase chaperone protein.
  
    0.786
SO_4359
Outer membrane protein MtrB family.
  
    0.651
SO_4360
Periplasmic decaheme cytochrome c MtrA family.
  
    0.587
dmsF
Extracellular dimethyl sulfoxide/manganese oxide reductase outer membrane translocase DmsF.
      
 0.571
SO_4358
Extracellular oxidoreductase molybdopterin-binding lipoprotein subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
    0.562
SO_4357
Extracellular oxidoreductase FeS binding subunit.
       0.511
mtrE
Extracellular respiratory sytem outer membrane component MtrE.
      
 0.449
SO_0093
Na+ dependent nucleoside transporter NupC family.
   
    0.429
SO_2384
Site-specific recombinase phage integrase family; Belongs to the 'phage' integrase family.
   
    0.413
SO_1454
Uncharacterized protein.
   
    0.404
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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