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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4379Fatty acid biosynthesis locus lipoprotein of unknown function DUF3261. (250 aa)    
Predicted Functional Partners:
SO_4373
Glycosyl transferase family 2.
  
    0.817
SO_4375
acyl-CoA thioester hydrolase, YbgC/YbaW family in fatty acid biosynthesis locus.
  
    0.807
SO_4376
Uncharacterized protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
    0.805
SO_4377
MMPL family efflux pump permease component.
  
    0.805
SO_4370
Membrane protein.
  
    0.803
SO_4378
FAD-binding protein.
  
    0.803
SO_4371
AMP-dependent synthetase and ligase family protein.
  
    0.802
SO_4372
Thioester dehydrase family protein.
  
    0.802
acpP-2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
    0.800
SO_4366
Uncharacterized protein.
  
    0.798
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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