STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_4402Uncharacterized protein. (73 aa)    
Predicted Functional Partners:
SO_4403
Lipopotein of unknown function DUF2959.
 
    0.809
argE
N-acetyl-L-ornithine deacetylase ArgE.
  
     0.626
SO_0308
Inner membrane protein of unknown function DUF1212.
  
     0.588
flgP
Outer membrane lipoprotein required for flagellar motility FlgP.
  
    0.571
SO_1478
TP-methylase family protein.
  
    0.566
SO_2902
RDD domain protein.
  
     0.552
rbn
tRNA-processing RNAse BN Rbn.
       0.551
SO_2518
Uncharacterized protein.
 
     0.537
SO_2192
Two component signal transduction system controlling sortase system histidine kinase.
  
     0.516
SO_3842
Secreted low complexity protein.
  
     0.510
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.