STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_4425Diguanylate cyclase. (392 aa)    
Predicted Functional Partners:
SO_0860
Two component signal transduction system response regulator with HD domain.
 
    0.929
SO_4323
Bifunctional diguanylate cyclase/phosphodiesterase LasD-like protein.
 
  
 0.879
SO_4003
Metal dependent phosphohydrolase with response regulator receiver modulation.
 
    0.871
SO_4145
Signalling protein with EAL and C2 domains.
 
    0.841
SO_3821
Diguanylate phosphodiesterase.
 
    0.840
bpfA
Biofilm-promoting protein BpfA.
   
  
 0.821
SO_1255
Bifunctional diguanylate cyclase/phosphodiesterase.
 
   0.813
SO_2498
Bifunctional diguanylate cyclase/phosphodiesterase with GAF and PAS sensory domains.
 
  
 0.811
SO_2539
Two component signal transduction system response regulator with cyclic diguanylate phosphodiesterase activity and PAS sensory domain.
  
 0.799
mshH
Signalling protein with GGDEF and EAL domains MshH.
  
  
 0.788
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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