STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
glnLNitrogen-responsive two component signal transduction system histidine kinase with PAS sensory domain GlnL. (348 aa)    
Predicted Functional Partners:
glnG
DNA-binding transcriptional regulator NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
 0.997
glnB
Regulatory protein for nitrogen assimilation by glutamine synthetase GlnB.
  
 0.977
SO_0760
Ammonium transporter channel family protein.
  
 
 0.884
glnK
Regulatory protein for nitrogen assimilation GlnK; Belongs to the P(II) protein family.
  
 
 0.843
glnK-2
Regulatory protein for nitrogen assimilation GlnK; Belongs to the P(II) protein family.
  
 
 0.813
SO_0547
Putative outer membrane protein TIGR02001 family.
   
    0.785
SO_4718
Tungstate-responsive two component Sigma54-dependent signal transduction system response regulator Fis family.
 
 0.691
phoB
Phosphate-responsive two component signal transduction system response regulator PhoB.
  
 
 
 0.677
glnD
protein-P-II uridylyltransferase GlnD; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism.
  
 
 0.676
dctD
Two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD; C4-dicarboxylate-responsive two component Sigma54-dependent signal transduction system response regulator DctD.
 
 0.675
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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