STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_4483Cytochrome b. (198 aa)    
Predicted Functional Partners:
shp
Monoheme cytochrome c Shp.
 
  
 0.891
dhc
Diheme cytochrome c Dhc.
    0.844
SO_3420
Monoheme cytochrome c'.
 
    0.707
SO_4486
PepSY domain protein.
 
    0.669
SO_4488
Two component signal transduction system histidine kinase.
 
    0.658
SO_4487
Two component signal transduction system response regulator with winged helix family DNA binding domain.
 
    0.610
SO_0714
Periplasmic monoheme cytochrome c4.
  
   
 0.569
sirI
Cytochrome c maturation system peptidyl-prolyl cis-trans isomerase SirI.
      
 0.511
SO_0717
Periplasmic monoheme cytochrome c4.
   
  
 0.503
torF
TMAO reductase system outer membrane porin TorF.
      
 0.494
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.