STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdhX-2Fnr-inducible formate dehydrogenase accessory protein FdhX. (66 aa)    
Predicted Functional Partners:
fdhB-2
Fnr-inducible formate dehydrogenase FeS subunit FdhB.
  
  
 0.923
fdhB
Formate dehydrogenase FeS subunit FdhB.
  
  
 0.859
fdhT
Formate dehydrogenase chaperone FdhT.
     
 0.793
fdhA-2
Fnr-inducilble formate dehydrogenase molybdopterin-binding subunit FdhA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
    0.768
SO_3468
Riboflavin synthase alpha subunit RibC-like protein.
   
  
 0.740
fdhC-2
Fnr-inducible formate dehydrogenase cytochrome b subunit FdhC.
  
    0.556
fdhC
Formate dehydrogenase cytochrome b subunit FdhC.
  
    0.492
ribE
Riboflavin synthase beta subunit RibE; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin; Belongs to the DMRL synthase family.
      
 0.485
frdA
Quinol:fumarate reductase FAD-binding subunit FrdA.
      
 0.456
coxC
Aa3 type cytochrome c oxidase subunit III CoxC.
   
    0.410
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.