STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_4516TonB-dependent siderophore receptor. (685 aa)    
Predicted Functional Partners:
SO_1580
TonB-dependent haem/haemoglobin receptor.
  
  
 0.927
putA
TonB-dependent ferric putrebactin siderophore receptor PutA.
  
  
 0.835
pubA
Putrescine monooxygenase PubA.
   
  
 0.765
yciL
Protein of unknown function YciL.
   
  
 0.695
SO_2426
Two component signal transduction system response regulator.
   
  
 0.674
ftn
Ferritin Ftn; Iron-storage protein.
   
  
 0.666
hmuA
TonB-dependent heme/hemoglobin receptor HmuA.
  
    0.614
SO_3062
Predicted inner membrane protein.
   
  
 0.537
SO_1156
TonB-dependent siderophore receptor.
  
     0.536
tonB2
TonB2 mediated energy transduction system energy transducer component TonB2; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 
 0.525
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.