STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_452710 TMS drug/metabolite efflux pump (DME) family. (284 aa)    
Predicted Functional Partners:
SO_4526
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
 
    0.800
SO_1582
Transcriptional regulator MarR family.
 
   
 0.727
SO_4044
Uncharacterized protein.
   
    0.701
holD
DNA polymerase III psi subunit HolD.
   
    0.608
SO_0056
ABC-type transport system substrate binding component.
  
   
 0.590
SO_4528
Predicted periplasmic protein.
  
    0.543
SO_1918
Multidrug and toxin efflux protein MATE family.
   
  
 0.530
SO_3692
ABC-type macrolide family export system ATPase component.
   
  
 0.526
macC
ABC-type macrolide export system secretin component MacC.
  
  
 0.525
SO_3694
ABC-type macrolide family export system MFP component.
   
  
 0.521
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.