STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnpA-132ISSod10 transposase TnpA ISSod10. (341 aa)    
Predicted Functional Partners:
tnpA-51
ISSod22 transposase TnpA_ISSod22.
  
     0.615
tnpA-84
ISSod6 transposase TnpA_ISSod6.
  
     0.468
tnpA-13
ISSod6 transposase TnpA_ISSod6.
  
     0.464
tnpA-37
ISSod6 transposase TnpA_ISSod6.
  
     0.464
tnpA-75
ISSod6 transposase TnpA_ISSod6.
  
     0.464
tnpA-81
ISSod6 transposase TnpA_ISSod6.
  
     0.464
tnpA-92
ISSod6 transposase TnpA_ISSod6.
  
     0.464
SO_4705
Transcriptional repressor Xre family.
 
     0.464
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.