STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4543Putative alpha-dextrin endo-1 6-alpha-glucosidase. (308 aa)    
Predicted Functional Partners:
susB
Alpha-glucosidase SusB.
     0.854
SO_0762
Isochorismate hydrolase family protein.
  
    0.669
SO_3025
Periplasmic siderophore cleavage esterase IroE family.
  
    0.669
malT
Putative maltose transporter MalT.
  
    0.522
SO_2906
Tellurite-resistance/dicarboxylate transporter (TDT) family protein.
   
    0.510
cyaC
Adenylate cyclase CyaC.
  
    0.474
SO_1069
Predicted membrane protein.
  
    0.438
SO_4542
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.432
altA
Transcriptional regulator AltA.
  
    0.408
SO_1157
Membrane protein of unknown function DUF1624.
  
    0.407
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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