STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_4559Sel1 domain-containing protein. (484 aa)    
Predicted Functional Partners:
SO_4139
TPR repeat protein.
  
     0.762
SO_0625
Periplasmic cyctochrome c oxidase regulatory protein.
  
     0.749
SO_0505
Sel1 repeat protein.
  
     0.732
SO_0497
Serine/threonine protein kinase.
 
     0.681
SO_4560
Predicted membrane protein.
  
    0.662
SO_0404
Zinc dependent metalloprotease domain lipoprotein.
  
     0.634
SO_0939
Split-soret diheme cytochrome c.
  
     0.566
SO_3124
Dual specificity protein-tyrosine phosphatase.
  
 
   0.554
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
 
 0.548
SO_0835
Putative periplasmic peptidase C15 superfamily.
  
 
   0.505
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.