STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4567Transcriptional regulator AsnC family. (143 aa)    
Predicted Functional Partners:
SO_0544
Two component signal transduction system histidine kinase with CHASE and PAS sensory domains.
      
 0.807
lrp
Leucine-responsive regulatory protein Lrp.
  
     0.775
SO_4337
Transcriptional regulator AsnC family.
  
     0.774
asnC
Asparagine-responsive transcriptional regulator AsnC.
  
     0.773
yjeH
L-leucine transporter YjeH.
 
    0.646
SO_4560
Predicted membrane protein.
   
    0.511
SO_2426
Two component signal transduction system response regulator.
      
 0.490
cpxA
Periplasmic stress-responsive two component signal transduction system histidine kinase CpxA.
      
 0.478
SO_4506
Iron-sulfur cluster-binding protein.
     
 0.457
putA-2
Bifunctional proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.444
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.