Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_4571Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family. (319 aa)    
Predicted Functional Partners:
SO_0404
Zinc dependent metalloprotease domain lipoprotein.
  
     0.684
SO_3124
Dual specificity protein-tyrosine phosphatase.
  
    0.625
SO_0497
Serine/threonine protein kinase.
  
     0.602
SO_4121
Protein with C-terminal FimV core domain.
   
    0.511
SO_4572
Triheme cytochrome c.
  
    0.510
SO_0312
Outer membrane porin.
  
    0.469
SO_3060
Outer membrane porin.
  
    0.452
SO_1505
Proton:peptide symporter POT family.
  
     0.430
SO_0588
Small conductance mechanosensitive ion channel protein MscS family.
  
     0.425
SO_3811
Family 16 outer membrane lipoprotein of unknown function.
  
     0.425
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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