Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fimAP pilus subunit FimA. (186 aa)    
Predicted Functional Partners:
cooB
Type I pilus assembly chaperone CooB.
  
 
 0.910
cooC
Type I pilus outer membrane usher porin CooC.
  
 
 0.855
yheS
REG family ATPase YheS.
      
 0.664
SO_3983
Protein of unknown function UPF0231; Belongs to the UPF0231 family.
  
    0.550
SO_2143
Aspartate-alanine antiporter.
  
    0.528
SO_0179
Aspartyl/asparaginyl beta-hydroxylase family protein.
   
    0.442
J
Lambda phage tail fiber protein J.
  
     0.437
SO_0853
PilD processed protein.
   
  
 0.420
SO_0850
Type IV pilin-associated adhesin.
   
  
 0.418
mnmC
Bifunctional 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the N-terminal section; belongs to the methyltransferase superfamily. tRNA (mnm(5)s(2)U34)-methyltransferase family.
  
    0.414
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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