STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtrHigh affinity tryptophan transporter Mtr. (418 aa)    
Predicted Functional Partners:
cymA
Membrane anchored tetraheme cytochrome c CymA.
  
   
 0.927
mtrC
Extracellular iron oxide respiratory system surface decaheme cytochrome c component MtrC.
      
 0.920
mtrA
Extracelllular iron oxide respiratory system periplasmic decaheme cytochrome c component MtrA.
      
 0.917
mtrF
Extracellular respiratory system surface decaheme cytochrome c component MtrF.
      
 0.910
omcA
Extracelllular iron oxide respiratory system surface decaheme cytochrome c component OmcA.
      
 0.904
mtrB
Extracellular iron oxide respiratory system outer membrane component MtrB.
      
 0.901
plsB
Glycerol-3-phosphate O-acyltransferase PlsB; Belongs to the GPAT/DAPAT family.
  
    0.781
trpR
Transcriptional repressor of aromatic amino acid biosynthesis TrpR.
 
   
 0.770
mtrD
Extracellular respiratory system periplasmic decaheme cytochrome c component MtrD.
      
 0.740
fccA
Periplasmic fumarate reductase FccA; Catalyzes fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown, but evidence indicates that flavocytochrome c participates in electron transfer from formate to fumarate and possibly also to trimethylamine oxide (TMAO). This enzyme is essentially unidirectional (By similarity); In the C-terminal section; belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
  
 0.738
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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