Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SO_4611 | SO_4612 | SO_4611 | SO_4612 | Aa3 type cytochrome c oxidase biogenesis protein Surf1-like protein. | Uncharacterized protein. | 0.968 |
SO_4611 | coxA | SO_4611 | SO_4607 | Aa3 type cytochrome c oxidase biogenesis protein Surf1-like protein. | Aa3 type cytochrome c oxidase subunit I CoxA; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.849 |
SO_4611 | coxB | SO_4611 | SO_4606 | Aa3 type cytochrome c oxidase biogenesis protein Surf1-like protein. | Aa3-type cytochrome c oxidase subunit II CoxB; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.941 |
SO_4611 | coxC | SO_4611 | SO_4609 | Aa3 type cytochrome c oxidase biogenesis protein Surf1-like protein. | Aa3 type cytochrome c oxidase subunit III CoxC. | 0.840 |
SO_4611 | ctaA | SO_4611 | SO_4613 | Aa3 type cytochrome c oxidase biogenesis protein Surf1-like protein. | Heme A synthase CtaA. | 0.980 |
SO_4611 | ctaB | SO_4611 | SO_4614 | Aa3 type cytochrome c oxidase biogenesis protein Surf1-like protein. | Protoheme IX farnesyltransferase (heme O synthase) CtaB; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.957 |
SO_4611 | ctaG | SO_4611 | SO_4608 | Aa3 type cytochrome c oxidase biogenesis protein Surf1-like protein. | Aa3 type cytochrome c oxidase assembly protein CtaG. | 0.905 |
SO_4611 | senC | SO_4611 | SO_4615 | Aa3 type cytochrome c oxidase biogenesis protein Surf1-like protein. | Cytochrome c oxidase biogenesis protein SenC. | 0.734 |
SO_4612 | SO_4611 | SO_4612 | SO_4611 | Uncharacterized protein. | Aa3 type cytochrome c oxidase biogenesis protein Surf1-like protein. | 0.968 |
SO_4612 | coxA | SO_4612 | SO_4607 | Uncharacterized protein. | Aa3 type cytochrome c oxidase subunit I CoxA; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.675 |
SO_4612 | coxB | SO_4612 | SO_4606 | Uncharacterized protein. | Aa3-type cytochrome c oxidase subunit II CoxB; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.974 |
SO_4612 | coxC | SO_4612 | SO_4609 | Uncharacterized protein. | Aa3 type cytochrome c oxidase subunit III CoxC. | 0.749 |
SO_4612 | ctaA | SO_4612 | SO_4613 | Uncharacterized protein. | Heme A synthase CtaA. | 0.982 |
SO_4612 | ctaB | SO_4612 | SO_4614 | Uncharacterized protein. | Protoheme IX farnesyltransferase (heme O synthase) CtaB; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.936 |
SO_4612 | ctaG | SO_4612 | SO_4608 | Uncharacterized protein. | Aa3 type cytochrome c oxidase assembly protein CtaG. | 0.836 |
SO_4612 | senC | SO_4612 | SO_4615 | Uncharacterized protein. | Cytochrome c oxidase biogenesis protein SenC. | 0.719 |
ccoN | coxA | SO_2364 | SO_4607 | Cbb3-type cytochrome c oxidase subunit I CcoN; Belongs to the heme-copper respiratory oxidase family. | Aa3 type cytochrome c oxidase subunit I CoxA; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.915 |
ccoN | coxB | SO_2364 | SO_4606 | Cbb3-type cytochrome c oxidase subunit I CcoN; Belongs to the heme-copper respiratory oxidase family. | Aa3-type cytochrome c oxidase subunit II CoxB; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.997 |
ccoN | coxC | SO_2364 | SO_4609 | Cbb3-type cytochrome c oxidase subunit I CcoN; Belongs to the heme-copper respiratory oxidase family. | Aa3 type cytochrome c oxidase subunit III CoxC. | 0.958 |
ccoN | ctaB | SO_2364 | SO_4614 | Cbb3-type cytochrome c oxidase subunit I CcoN; Belongs to the heme-copper respiratory oxidase family. | Protoheme IX farnesyltransferase (heme O synthase) CtaB; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.917 |
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