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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dinFDNA damage-inducible multidrug and toxin efflux protein DinF. (455 aa)    
Predicted Functional Partners:
SO_4616
Carbohydrate esterase family 4.
 
     0.669
SO_4618
Subfamily S9C unassigned peptidase.
       0.558
rpsA
Ribosomal protein S1 RpsA; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
    0.515
lolD
ABC-type lipoprotein release system ATPase component LolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
  
 0.508
mexE
HAE1 family efflux pump MFP component MexE; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  
 0.491
tolC
Global secretion system secretin TolC.
   
  
 0.491
mlaD
ABC-type phospholipid uptake (salvage) system substrate-binding component MlaD.
      
 0.489
ybbP
Putative ABC-type fatty acid export system permease component YbbP.
      
 0.487
vexR
Transcriptional repressor of multidrug/detergent efflux pump VexR.
      
 0.485
lolE
ABC-type lipoprotein release system permease component LolE.
  
  
 0.464
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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