Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_4618Subfamily S9C unassigned peptidase. (645 aa)    
Predicted Functional Partners:
dinF
DNA damage-inducible multidrug and toxin efflux protein DinF.
       0.558
SO_3514
TonB-dependent chitooligosaccharide receptor.
  
     0.539
SO_3513
Flavin-dependent tryptophan halogenase.
  
     0.538
SO_1188
Inner membrane protein with PepSY TM helix.
  
    0.461
SO_0914
Beta lactamase family protein.
  
     0.438
SO_2523
TonB-dependent phytase receptor.
  
     0.437
malT
Putative maltose transporter MalT.
  
     0.434
SO_1189
Putative periplasmic protein of unknown function DUF2271.
  
    0.433
SO_3361
Protein of unknown function DUF885.
  
    0.427
SO_4616
Carbohydrate esterase family 4.
  
    0.423
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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